Dr Karin Slater PhD

Dr Karin Slater

Department of Cancer and Genomic Sciences
Assistant Professor of Biomedical Semantics

Contact details

Email
l.slater.1@bham.ac.uk
Address
Department of Cancer and Genomic Sciences
University 麻豆精选
Edgbaston
Birmingham
B15 2TT
UK

Dr. Slater serves as an Assistant Professor of Biomedical Semantics. She is deeply passionate about exploring semantic techniques to create and analyse functionally linked data. Her ultimate aim is to derive actionable insights that produce real-world impacts across a variety of scientific disciplines.

Qualifications

  • PhD in Computational Biology, 2020
  • Bsc (Hons) in Open Source Computing, Aberystwyth University, 2015

Teaching

  • MSc Health Data Science
  • MSc Bioinformatics

Research

Research Interests

  • Ontology and ontology accessories
  • Functionally linked data
  • FAIRification
  • Semantic methods and analysis
  • Machine learning (ML)
  • Natural language processing (NLP)
  • Knowledge graphs 

Current Projects

  • Exploring multi-contextual representations of biomedical entities
  • Semantic solutions for chemical risk assessment and environmental health
  • Multi-modal information extraction and analysis for clinical applications
  • Exploring scientific knowledge provenance

 Note: Also credited in publications as LT Slater 

Publications

Recent publications

Article

Slater, K, Schofield, PN, Wright, J, Clift, P, Irani, A, Bradlow, W, Aziz, F & Gkoutos, GV 2024, '', NPJ digital medicine, vol. 7, 263.

BigData@Heart Consortium and the cardAIc group 2023, '', European Heart Journal, vol. 44, no. 9, pp. 713鈥�725.

Maier, D, Exner, TE, Papadiamantis, AG, Ammar, A, Tsoumanis, A, Doganis, P, Rouse, I, Slater, LT, Gkoutos, GV, Jeliazkova, N, Ilgenfritz, H, Ziegler, M, Gerhard, B, Kopetsky, S, Joshi, D, Walker, L, Svendsen, C, Sarimveis, H, Lobaskin, V, Himly, M, Van rijn, J, Winckers, L, Mill谩n acosta, J, Willighagen, E, Melagraki, G, Afantitis, A & Lynch, I 2023, '', Frontiers in Physics, vol. 11, 1271842.

Slater, LT, Williams, JA, Schofield, PN, Russell, S, Pendleton, SC, Karwath, A, Fanning, H, Ball, S, Hoehndorf, R & Gkoutos, GV 2023, '', Computers in Biology and Medicine, vol. 153, 106425.

Aziz, F, Slater, LT, Bravo-Merodio, L, Acharjee, A & Gkoutos, GV 2023, '', Scientific Reports, vol. 13, no. 1, 14660.

Slater, LT, Russell, S, Makepeace, S, Carberry, A, Karwath, A, Williams, JA, Fanning, H, Ball, S, Hoehndorf, R & Gkoutos, GV 2022, '', BMC Medical Informatics and Decision Making, vol. 22, no. 1, 33.

Maruszczyk, K, Aiyegbusi, OL, Roth Cardoso, V, Gkoutos, G, Slater, L, Collis, P, Keeley, T & Calvert, M 2022, '', Contemporary Clinical Trials, vol. 120, 106882.

Slater, LT, Bradlow, W, Motti, DF, Hoehndorf, R, Ball, S & Gkoutos, GV 2021, '', Computers in Biology and Medicine, vol. 130, 104216.

Pendleton, SC, Slater, LT, Karwath, A, Gilbert, RM, Davis, N, Pesudovs, K, Liu, X, Denniston, AK, Gkoutos, GV & Braithwaite, T 2021, '', Computers in Biology and Medicine, vol. 135, 104542.

Slater, LT, Karwath, A, Hoehndorf, R & Gkoutos, GV 2021, '', Frontiers in digital health, vol. 3, 781227.

Carr, E, Bendayan, R, Bean, D, Stammers, M, Wang, W, Zhang, H, Searle, T, Kraljevic, Z, Shek, A, Phan, HTT, Muruet, W, Gupta, RK, Shinton, AJ, Wyatt, M, Shi, T, Zhang, X, Pickles, A, Stahl, D, Zakeri, R, Noursadeghi, M, O'Gallagher, K, Rogers, M, Folarin, A, Karwath, A, Wickstr酶m, KE, K枚hn-Luque, A, Slater, L, Cardoso, VR, Bourdeaux, C, Holten, AR, Ball, S, McWilliams, C, Roguski, L, Borca, F, Batchelor, J, Amundsen, EK, Wu, X, Gkoutos, GV, Sun, J, Pinto, A, Guthrie, B, Breen, C, Douiri, A, Wu, H, Curcin, V, Teo, JT, Shah, AM & Dobson, RJB 2021, '', BMC medicine, vol. 19, no. 1, 23.

Slater, LT, Bradlow, W, Ball, S, Hoehndorf, R & Gkoutos, GV 2021, '', Journal of Biomedical Semantics, vol. 12, no. 1, 7.

Slater, LT, Williams, JA, Karwath, A, Fanning, H, Ball, S, Schofield, PN, Hoehndorf, R & Gkoutos, GV 2021, '', Computers in Biology and Medicine, vol. 138, 104904.

Preprint

Slater, LT, Russell, S, Makepeace, S, Carberry, A, Karwath, A, Williams, JA, Fanning, H, Ball, S, Hoehndorf, R & Gkoutos, GV 2021 '' medRxiv.

Review article

Wu, H, Wang, M, Wu, J, Francis, F, Chang, Y-H, Shavick, A, Dong, H, Poon, MTC, Fitzpatrick, N, Levine, AP, Slater, LT, Handy, A, Karwath, A, Gkoutos, GV, Chelala, C, Shah, AD, Stewart, R, Collier, N, Alex, B, Whiteley, W, Sudlow, C, Roberts, A & Dobson, RJB 2022, '', NPJ digital medicine, vol. 5, no. 1, 186.